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[modeller_usage] Modelling with ligands while maintaining correct chain ID



Hello,

I have a template that has the following structure:

Chain A
Chain B
ligand 1 A
ligand 2 A
ligand 3 B
ligand 4 B

I edit my ali file to place 4 dots at the end of the second chain before the *. This results however, in having all four ligands as part of of the B chain in my model. 

How can I fix that? 

Regards.