Modeller_Usage Mailing List (by thread)

• Date Index

• Re: [modeller_usage] mail about an error, Modeller Caretaker
• [modeller_usage] read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file, Andrea Spinelli
  • Re: [modeller_usage] read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file, Modeller Caretaker
    • Re: [modeller_usage] read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file, Andrea Spinelli
      • Re: [modeller_usage] read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file, Modeller Caretaker
      • Re: [modeller_usage] read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file, Téletchéa Stéphane
      • Re: [modeller_usage] read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file, Andrea Spinelli
      • Re: [modeller_usage] read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file, Modeller Caretaker
      • Re: [modeller_usage] read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file, Andrea Spinelli
• [modeller_usage] Fw: Builing of homotrimer from a homology structure, Sourav Pal
• [modeller_usage] Optimization of an existing loop model, Claire Marks
  • Re: [modeller_usage] Optimization of an existing loop model, Modeller Caretaker
• [modeller_usage] Modelling of Homotrimeric protein without biological assembly, Sourav Pal
• [modeller_usage] modeller error; " ValueError: too many arguments to unpack", Sourav Pal
  • Re: [modeller_usage] modeller error; " ValueError: too many arguments to unpack", Modeller Caretaker
• [modeller_usage] How to make better conformational sampling of models using MODELLER?, Mahesh VELUSAMY
  • Re: [modeller_usage] How to make better conformational sampling of models using MODELLER?, Modeller Caretaker
    • Re: [modeller_usage] How to make better conformational sampling of models using MODELLER?, Mahesh VELUSAMY
      • Re: [modeller_usage] How to make better conformational sampling of models using MODELLER?, Modeller Caretaker
• [modeller_usage] Help with rigid body minimization of protein-protein complex, mromero
  • Re: [modeller_usage] Help with rigid body minimization of protein-protein complex, Modeller Caretaker
• [modeller_usage] residue selection by sequence, Shyam Saladi
  • Re: [modeller_usage] residue selection by sequence, Modeller Caretaker
• [modeller_usage] Evaluate protein-peptide complexes using modeller, SIMON KØNIG
  • Re: [modeller_usage] Evaluate protein-peptide complexes using modeller, Modeller Caretaker
• [modeller_usage] How can I change the outputted structure names?, Ahmad Abdelzaher
  • Re: [modeller_usage] How can I change the outputted structure names?, Modeller Caretaker
• [modeller_usage] How define restrains between model and template?, Mario A Bianchet
  • Re: [modeller_usage] How define restrains between model and template?, Modeller Caretaker
    • Re: [modeller_usage] How define restrains between model and template?, Mario A Bianchet
      • Re: [modeller_usage] How define restrains between model and template?, Modeller Caretaker
• Re: [modeller_usage] How define restrains between model and template?, Mario A Bianchet
• [modeller_usage] modeling a chimeric protein, Ayesha Fatima
  • Re: [modeller_usage] modeling a chimeric protein, Modeller Caretaker
• [modeller_usage] modeller_query, niki24
  • Re: [modeller_usage] modeller_query, Modeller Caretaker
• [modeller_usage] Protein specified in ALIGN_CODES(i) was not found, Ahmad Abdelzaher
  • Re: [modeller_usage] Protein specified in ALIGN_CODES(i) was not found, Ajasja Ljubetič
• Re: [modeller_usage] modeller_usage Digest, Vol 17, Issue 14, Jin-Soo Chang
• [modeller_usage] Multiple instance reading the same restraint file, Ajasja Ljubetič
  • Re: [modeller_usage] Multiple instance reading the same restraint file, Modeller Caretaker
    • Re: [modeller_usage] Multiple instance reading the same restraint file, Ajasja Ljubetič
• [modeller_usage] Reordering chains in template structure, Ajasja Ljubetič
  • Re: [modeller_usage] Reordering chains in template structure, Modeller Caretaker
    • Re: [modeller_usage] Reordering chains in template structure, Ajasja Ljubetič
• [modeller_usage] mutation including fixed new-atom/old-atom distance, Maria Sola i Vilarrubias
  • Re: [modeller_usage] mutation including fixed new-atom/old-atom distance, Modeller Caretaker
• [modeller_usage] Modeller 9.20 release, Modeller Caretaker
• [modeller_usage] Imposing rigid body restraint, Richard E. Gillilan
  • Re: [modeller_usage] Imposing rigid body restraint, Modeller Caretaker
    • Re: [modeller_usage] Imposing rigid body restraint, Richard Gillilan
• [modeller_usage] Reg. Evaluation of multiple template based multi models in one script, KEDAR SHARMA
  • Re: [modeller_usage] Reg. Evaluation of multiple template based multi models in one script, Modeller Caretaker
• [modeller_usage] Query Regarding Running Modeller From Mac, Aparna Bahuguna
  • Re: [modeller_usage] Query Regarding Running Modeller From Mac, Aparna Bahuguna
    • Message not available
      • Message not available
      • Re: [modeller_usage] Query Regarding Running Modeller From Mac, Ajasja Ljubetič
    • Re: [modeller_usage] Query Regarding Running Modeller From Mac, Mahesh VELUSAMY
      • Re: [modeller_usage] Query Regarding Running Modeller From Mac, Modeller Caretaker
  • Re: [modeller_usage] Query Regarding Running Modeller From Mac, Modeller Caretaker
• [modeller_usage] Query about structural alignment of a homopentamer with salign, Iván Felsztyna
  • Re: [modeller_usage] Query about structural alignment of a homopentamer with salign, Modeller Caretaker
• [modeller_usage] homology modeling, Mohammad Goodarzi
  • Re: [modeller_usage] homology modeling, Modeller Caretaker
    • Re: [modeller_usage] homology modeling, Mohammad Goodarzi
• [modeller_usage] DOPE energy plot, Mohammad Goodarzi
  • Re: [modeller_usage] DOPE energy plot, Modeller Caretaker
    • Re: [modeller_usage] DOPE energy plot, Mohammad Goodarzi
      • Re: [modeller_usage] DOPE energy plot, Modeller Caretaker
      • Re: [modeller_usage] DOPE energy plot, Mohammad Goodarzi
• [modeller_usage] Query about symmetry in a multi-chain model, Iván Felsztyna
  • Re: [modeller_usage] Query about symmetry in a multi-chain model, Modeller Caretaker
• [modeller_usage] ModellerError: read_te_290E> Number of residues in the alignment and pdb files are different, Ahmad Khalifa
  • Re: [modeller_usage] ModellerError: read_te_290E> Number of residues in the alignment and pdb files are different, Modeller Caretaker
• [modeller_usage] Modelling with ligands while maintaining correct chain ID, Ahmad Khalifa
• [modeller_usage] Alignment format in fasta, Ahmad Khalifa
  • Re: [modeller_usage] Alignment format in fasta, Modeller Caretaker
• [modeller_usage] Creating a threaded protein template?, Ahmad Khalifa
  • Re: [modeller_usage] Creating a threaded protein template?, Modeller Caretaker
• [modeller_usage] Usage question - specifying secondary structure and so on, Marko Sever
  • Re: [modeller_usage] Usage question - specifying secondary structure and so on, Modeller Caretaker
• [modeller_usage] Installation on Ubuntu 18.04, Marco Sette
  • Re: [modeller_usage] Installation on Ubuntu 18.04, Modeller Caretaker
• [modeller_usage] Modeller license key, Kimia Sh
  • Re: [modeller_usage] Modeller license key, Modeller Caretaker
• [modeller_usage] How to (partially) override model.patch_ss_templates() ?, Luca Jovine
  • Re: [modeller_usage] How to (partially) override model.patch_ss_templates() ?, Modeller Caretaker
    • Re: [modeller_usage] How to (partially) override model.patch_ss_templates() ?, Luca Jovine
      • Re: [modeller_usage] How to (partially) override model.patch_ss_templates() ?, Modeller Caretaker
      • Re: [modeller_usage] How to (partially) override model.patch_ss_templates() ?, Luca Jovine
• [modeller_usage] Modeller 9.21 release, Modeller Caretaker