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Re: [modeller_usage] can I add ambiguous restraints to modeller
- To: Li Xue <>,
- Subject: Re: [modeller_usage] can I add ambiguous restraints to modeller
- From: Modeller Caretaker <>
- Date: Thu, 11 Mar 2021 13:53:49 -0800
On 3/11/21 11:32 AM, Li Xue wrote:
Does modeller accept ambiguous restraints? For example, I know there is
helix in a region but I am not sure where it starts.
Yes, if you can dream up a function of your coordinates, Modeller can
restrain it. Built-in restraint forms can be seen at
https://salilab.org/modeller/10.0/manual/node109.html
or you can implement your own, as per
https://salilab.org/modeller/10.0/manual/node480.html
That being said, we don't have an existing restraint that does exactly
what you describe; you would have to add one.
Ben Webb, Modeller Caretaker
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