Re: [modeller_usage] DNA nucleotide protein modeling
To: Rana Rehan Khalid <>,
Subject: Re: [modeller_usage] DNA nucleotide protein modeling
From: Modeller Caretaker <>
Date: Mon, 26 Apr 2021 15:58:37 -0700
On 4/26/21 3:33 PM, Rana Rehan Khalid wrote:
I apply same thing again with DNA Nucleotides its gives me error, I
used following names for DNA Resi DADE DGUA DCYT DTHY # I
also want to ask is this right to use DADE DCYT etc or modeller
recognise these namings DT, DA, DG, DC
Modeller recognizes standard PDB naming for RNA and DNA, i.e. A, G, C,
T, U, DA, DG, DC, DT, DU in ATOM records. You can't use 4-letter residue
names anyway because PDB format limits you to 3 characters.