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Re: [modeller_usage] Is occupancy value in the PDB considered for MODELLER?
On 5/15/21 1:25 AM, ZHANG Cheng wrote:
The occupancy value is the0„257th-60th columns in the PDB file. Is this
considered by MODELLER? For example, will a value of "0.00" or "1.00"
have different effect (e.g. weights) for the modelling?
No. Modeller reads the occupancy value for templates (you can access it
as Atom.occ: https://salilab.org/modeller/10.1/manual/node388.html ) but
does not use it in modeling.
Output models will generally have an occupancy of 1.
Ben Webb, Modeller Caretaker
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