[modeller_usage] refine a loop in a multi-chain complex

[Li Xue <>]

Hello, I am trying to refine a loop in a multi-chain complex. During the refinement/remodelling phase of the loop, does modeller molPDF include non-bonded energies between chains? Or it will only include the energies within the loop?  ‍ ‍ ‍ ‍

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Hello,

I am trying to refine a loop in a multi-chain complex. During the refinement/remodelling phase of the loop, does modeller molPDF include non-bonded energies between chains? Or it will only include the energies within the loop? 

Many thanks.

Best,

Li