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eIF3 Modeling

Data and scripts to model eIF3 from mass spec data PubMed logo

tickVerified to work with the latest stable IMP release (2.9.0). The files are also available at GitHub.
Additional software needed to use these files: IMP install instructions

Anaconda logo To install the software needed to reproduce this system with the Anaconda Python command line tool (conda), run the following commands:

conda config --add channels salilab
conda install imp

UCSF logo To set up the environment on the UCSF QB3 cluster to run this system, run:

module load imp
Tags chemical crosslinks native mass spec

DOI

Data and scripts to model eIF3 from MS data.

Steps

The method used here is the same as that used for the MS benchmark.

To generate models, run the ms_cg.py script. This will generate a number of models of the complex, named conf_eif3.<num>.pym.

The .pym files can be converted to .tcl files by running the pym2tcl.py script, and then to .mfj files by running the tcl2mfj.py script.

Info

Author(s): Argyris Politis, email:argyris.politis@kcl.ac.uk

Version: 1.0

License: LGPL. This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

Last known good IMP version: build info build info

Testable: Yes.

Parallelizeable: No

Publications: