Daniel Russel wrote: > I would like to propose getting rid of the trajectory log in the model > as we can do the same sort of thing using State classes. Since these > aren't part of the Model, they would be much more flexible and > customizable. I currently have such a state for writing chimera BILD > files that I can submit at some point.
Agreed. The trajectory log is very inflexible, and does not use any kind of standard format. I had also mentally targeted it for destruction. This will, of course, horribly break the Restrainer web interface, but presumably Jeremy will speak up if this is a problem for him.
> And I would propose removing the ModelData OptimizedIndexIterator (or > whatever it is called). The API is funny and it doesn't provide any > functionality which can't be achieved other ways using more or less > the same number of lines of code.
No complaints from me.
Ben