Daniel Russel wrote: >> - by the way, it might be useful to include some more tags to the >> restraints to account for hierarchies. either some fixed number of >> hierarchies (frank had 14, i think) or fancier to model the universe. >> > I don't understand. How would this go in the restraints?
As designed, the hierarchy is encoded primarily in the particles and restraint sets, not the restraint attributes. Then you just turn on/off sets of particles (or sets of restraints) accordingly.
Ben