Hi Andrea,
Here is an example of how to get the contact maps using PMI_Analysis:
https://github.com/salilab/PMI_analysis/blob/main/example/get_CMs.py
Let me know if you have any questions. Best, Ignacia
On Mon, Sep 27, 2021 at 5:43 PM Ben Webb ben@salilab.org wrote:
> On 9/24/21 8:37 AM, Andrea Graziadei wrote: > > I have seen in some manuscripts (e.g. the cop9 signalosome paper by > > Gutierrez et al. https://www.pnas.org/content/117/8/4088 ) the > > analysis of average contact maps from clusters coming out of > > imp-sampcon or similar analysis of PMI modeling runs. In that > > manuscript for example it's in Fig. S7, panel G. I was wondering if > > you could tell me what is the tool used for this type of analysis, and > > whether it works on pdb or rmf files? > > The authors of that paper (cc'd here) will know for sure, but all the > scripts they used should be in the GitHub repository at > https://github.com/integrativemodeling/CSN2019 > > Ben > -- > ben@salilab.org https://salilab.org/~ben/ > "It is a capital mistake to theorize before one has data." > - Sir Arthur Conan Doyle >