Hi, Daniel,
Many Thanks.
We would like to input a network, which means a set of binary proteins with interaction, and hope IMP could produce a graph of the network. Also, we want to represent some biological restraints on the protein-protein interaction we generalized in IMP, reduce some interactions and optimize the network.
So, could you give me some more advice?
Thank,again, Hongzhu
-- Hongzhu Cui, PhD Student
University of Missouri Informatics Institute 246 Engineering Building West Columbia, MO 65211 phone: +1(573)239-1592 e-mail: cuihzh@gmail.com; hcxk9@mail.missouri.edu
2013/11/1 Daniel Russel drussel@gmail.com
> Can you provide a bit more information about what you want to do with the > network? Are you looking to find a structure? Or produce a graph of the > network at the end? > > The connectivity restraints may be something you want to look at > core::ConnectivityRestraint and core::MSConnectivityRestraint and > atom::create_connectivity_restraint(). > > > On Thu, Oct 31, 2013 at 10:13 PM, Hongzhu Cui cuihzh@gmail.com wrote: > >> >> Hi, all, >> >> Recently, I have a project with IMP. Basically, we need to represent a >> protein-protein interaction network in IMP, and then we add some restraints >> to see how we could optimize this network. But I stuck on this problem, and >> I did not find any similar example in the Manual documentation. >> >> Thanks & Regards, >> Hongzhu >> >> _______________________________________________ >> IMP-users mailing list >> IMP-users@salilab.org >> https://salilab.org/mailman/listinfo/imp-users >> >> > > _______________________________________________ > IMP-users mailing list > IMP-users@salilab.org > https://salilab.org/mailman/listinfo/imp-users > >