Various things. First, don't use 1.0, use current SVN, it is much better, faster, more stable etc and we can't easily support 1.0 at this point.

I've been using IMP on ubuntu without any problems, so, in general, things should work. In terms of the specific error messages - graphviz is only used via the executables (namely dot) so just make sure that is in your path. - libpath=/usr/lib:/usr/lib64 path=/usr/bin should be the default values and can be omitted. - once you install IMP, you are responsible for getting your PYTHONPATH and LD_LIBRARY_PATH right so that python works properly. You can, instead, just use IMP out of the build directory with the help of the tools/imppy.sh script. - I have no idea about the file descriptor message

Anyway, hope that helps you along.

On Tue, Oct 11, 2011 at 12:31 PM, Martin Turk turk@lmb.uni-muenchen.dewrote:

> Dear imp users and developers, > > I need some help with compiling the source code on Ubuntu 10.04 > I tried compiling imp with: > >scons prefix=/installation/folder build=debug install > > and the only imp binaries being generated are foxs and > protein_ligand_score. > > the only error I get is: > """ > sh: Syntax error: Bad fd number > """ > and the graphviz, gslcblas and modeller dependencies are missing > otherwise the installation finishes without errors. > > Since Ubuntu has system libraries in a different place than Fedora I > tried compiling imp by specifying libpath and linking it to python. What > is odd is that graphviz and gslcblas are not found when I specify libpath > /usr/lib/graphviz/ > /usr/lib/libgslcblas.so.0 > >scons -j 16 libpath=/usr/lib:/usr/lib64 path=/usr/bin > pythonpath=/usr/lib64/python2.6 prefix=/home/turk/imp build=debug install > > again I assume the installation directory is missing some content > ../bin: > protein_ligand_score > foxs > ../lib64/python2.6/site-packages: > IMP > _IMP_algebra.so > _IMP_atom.so > _IMP_benchmark.so > _IMP_container.so > _IMP_core.so > _IMP_display.so > _IMP_domino.so > _IMP_em.so > _IMP_example.so > _IMP_gsl.so > _IMP_helper.so > _IMP_misc.so > _IMP_restrainer.so > _IMP_saxs.so > _IMP.so > _IMP_statistics.so > > after adding site-packages to the $PYTHONPATH > python import imp gives me: > i>>> import IMP > Traceback (most recent call last): > File "<stdin>", line 1, in <module> > File "/home/turk/imp/lib64/python2.6/site-packages/IMP/__init__.py", > line 25, in <module> > _IMP = swig_import_helper() > File "/home/turk/imp/lib64/python2.6/site-packages/IMP/__init__.py", > line 17, in swig_import_helper > import _IMP > ImportError: libimp.so: cannot open shared object file: No such file or > directory > > Now I don't know what to try next and if playing with swig will bring me > any further -> the email :-) > All suggestions are welcome :) > > Martin > > > _______________________________________________ > IMP-users mailing list > IMP-users@salilab.org > https://salilab.org/mailman/listinfo/imp-users >