Re: [modeller_usage] python script error

On 5/30/19 2:13 PM, Bruno Cramer wrote: > bcramer@schrodinger:~/workdir-modeller9.1$ python runmodeller-test1.py >   File "runmodeller-test1.py", line 13 >     a = automodel(env, alnfile = ’alinha.pir’, knowns = ’4hpg’, > sequence = ’bgl’) >                                  ^ > SyntaxError: invalid syntax

This isn't a Modeller issue. Python expects its scripts to be plain text. Use a regular quote character (' not ’) for your strings here (you use the right one when you set atom_files_directory above).

Ben Webb, Modeller Caretaker