[modeller_usage] RMS and DRMS functions of COMPARE

Hello there,

'compare' can be used to calculate the RMSD between the template and models. In general, during homology modelling, there can be residues mutated in the sequence alignment so that the different numbers of atoms are superimposed in Catesian space.

I wonder how MODELLER work out the RMSD under this situition?

Thanks a lot.

Binbin