19 Jul
2004
19 Jul
'04
8:55 a.m.
Hello there,
'compare' can be used to calculate the RMSD between the template and models. In general, during homology modelling, there can be residues mutated in the sequence alignment so that the different numbers of atoms are superimposed in Catesian space.
I wonder how MODELLER work out the RMSD under this situition?
Thanks a lot.
Binbin
--
Binbin Liu
Bioinformatics Ph.D student
School of Biomedical Sciences
University of Leeds,
Leeds,LS2 9JT
England, UK
Phone: (44)113 343 3072
Email: bmbbl@bmb.leeds.ac.uk