[modeller_usage] automodel vs loopmodel

When I run the automodel or the loopmodel classes, either way I get a target.B99990001.pdb for the structure of the final model. From the documentation, I understand that in the case of the loopmodel, an extra pdb file will be produced with refined loops. My question is: Should the models in files target.B99990001.pdb be the same whether I use automodel or loopmodel? (provided I'm using the same optimizations and all, I'm just changing the class name in the python script)

Thanks!