Re: [modeller_usage] retrieve fitted models after iterative_structural_align()

On 5/18/11 7:18 AM, Benjamin SCHWARZ wrote: > Can someone tell me what is the (best) way to extract fitted models > after an iterative_structural_align() ?

Use Structure.write(): http://salilab.org/modeller/9.9/manual/node315.html

aln = alignment( env ) for model in models: aln.append_model( model ) salign.iterative_structural_align( aln )

for s in aln: s.write('%s-fitted.pdb' % s.code)

Ben Webb, Modeller Caretaker