Re: [modeller_usage] Reordering chains in template structure

On 5/25/18 2:17 AM, Ajasja Ljubetič wrote: > I have a template of four single chains, however in the target > (single-chain) structure the chain segments are in a different order ... > *Is it possible to somehow specify this correctly in the alignment > file?*

No - your two options are (as you correctly stated) to reorder the input PDB or to use multiple templates (losing interchain restraints in the latter case).

That said, it's a little unusual to build a single chain model using a multi-chain template. What are you trying to do?

Ben Webb, Modeller Caretaker