Re: [modeller_usage] Is occupancy value in the PDB considered for MODELLER?

On 5/15/21 1:25 AM, ZHANG Cheng wrote: > The occupancy value is the 57th-60th columns in the PDB file. Is this > considered by MODELLER? For example, will a value of "0.00" or "1.00" > have different effect (e.g. weights) for the modelling?

No. Modeller reads the occupancy value for templates (you can access it as Atom.occ: https://salilab.org/modeller/10.1/manual/node388.html) but does not use it in modeling.

Output models will generally have an occupancy of 1.

Ben Webb, Modeller Caretaker