Re: [modeller_usage] Error using local_alignment=True in salign

On 11/06/2015 01:38 AM, David Abia wrote: > I'm trying to force a local alignment while using salign function in > mod9.15, and it fails with error: > > "modeller.ModellerError: align_l_251E> MATRIX_OFFSET probably has an > invalid value: 0.0000"

When doing local alignments, you need to set the matrix offset appropriately (the salign function has a matrix_offset parameter). It may take some experimentation to find a suitable value for your system.

Ben Webb, Modeller Caretaker