Re: [modeller_usage] Bug in documentation: automodel.get_model_filename() takes five arguments

On 10/23/2015 07:07 AM, Ajasja Ljubetič wrote: > In the documentation > https://salilab.org/modeller/9.15/manual/node75.html the signature for > automodel.get_model_filename() is declared as > > get_model_filename(sequence, id1, id2, file_ext)

We don't include 'self' in the parameter list for any of the methods, since it's kind of implicit.

> Or maybe a quick example could be added: How to move the pdb files into > subfolder outdir

The better way to do this (as you figured out already) is to cd into outdir. Output files are always deposited in the current directory. You can certainly give a full path for any inputs if you don't want to also put them in that directory.

Ben Webb, Modeller Caretaker