[modeller_usage] Re: Oligomer Missing Loop Residue Restrained Modeling, Broken Loop Issue

On 9/22/22 9:57 AM, Joel Subach wrote: > In my case which tutorial should I follow for this loop refinement:

The advanced tutorial at https://salilab.org/modeller/tutorial/advanced.html is the best place to start. The Cryo-EM tutorial scores the resulting loop models based on their fits into a cryo-EM map, so wouldn't make sense for you unless you also have such a map.

Alternatively, you can use the ModLoop web server at https://modbase.compbio.ucsf.edu/modloop/

Ben Webb, Modeller Caretaker