[modeller_usage] Re: model different regions of a protein

On 9/9/24 4:52 PM, José Xavier via modeller_usage wrote: > I'm new here.. so sorry if this is an already answered question. > > I want to model a protein but the better template doesn't show ~50 > aminoácids in its sequence. Is it possible to model the protein based on > this template and only the region of ~50 residues based on another > template?

Yes, this is certainly possible with a suitable alignment; see the FAQ: https://salilab.org/modeller/FAQ.html#1

Ben Webb, Modeller Caretaker