Fixed! Thank you so much for the explanations.
On Mon, Mar 31, 2025 at 9:18 PM Modeller Caretaker < modeller-care@salilab.org> wrote:
> On 3/31/25 6:21 AM, Fred Pontes via modeller_usage wrote: > > "/_modeller.ModellerError: read_al_373E> Protein specified in > > ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( > > 1) = 6KG7.pdb/" > > Jed is correct here. The align code is the thing after ">P1;" in your > alignment file (in this case you called it 'template1') not the thing > after "structure:" (that's the name of the PDB file). You can call an > alignment sequence anything you want (including the name of the PDB if > you like). > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org https://salilab.org/modeller/ > Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage > >