Re: [modeller_usage] Quick Question on Automodel

On 3/8/21 4:03 AM, Pedro Guillem wrote: > Is there an *explicit way *to tell modeller which residue (in the > template) must be aligned with which residue in the sequence?

Yes, this is what your alignment is for. If you align residue X in your target with residue Y in your template, that's what you'll get in your output model, end of story.

> I'm looking to keep the structure identical in some segments.. and have > modeller make a best guess in other parts.

See https://salilab.org/modeller/10.0/manual/node23.html

Ben Webb, Modeller Caretaker