15 Jul
2014
15 Jul
'14
4:41 p.m.
Hello MODELLER users,
After looking through the mailing list I have been able to find numerous discussions about protein:protein complex homology modeling, however I have been unable to find any examples for proper PIR formatting and was wondering if someone would be willing to help.
I would like to perform modeling for unknown complex A2:B1 where A1:B1 is known and while holding B1 completely frozen. Would the following PIR snippet below work for such modeling or is more information required on the second line as shown here https://salilab.org/modeller/9v8/manual/node454.html?
>P1;Comp1 Known Complex AAABBAAAA/ CCCCCCCCC*
>P1;Comp2 Unknown Complex AAADDAAAA/ CCCCCCCCC*
Cheers, Parker