hi all iam a fresher working on modeller and nothing is going on here properly . i use a win me machine with mod6v2 installed. i tried an alignment file to model but its not working .i have included the top files for reference INCLUDE # Include the predefined TOP routines SET OUTPUT_CONTROL = 1 1 1 1 1 # uncomment to produce a large log file SET ALNFILE = 'alignmentfile.ali' # alignment filename SET KNOWNS = '1HM9' # codes of the templates SET SEQUENCE = 'query' # code of the target SET ATOM_FILES_DIRECTORY = 'c:/mod6v2/bin/1hm9.pdb' # directories for input atom files SET STARTING_MODEL= 1 # index of the first model SET ENDING_MODEL = 1 # index of the last model # (determines how many models to calculate) CALL ROUTINE = 'model' # do homology modelling
i dont know what does this atom_files mean.plz explain the ERROR it shows is as follows: openf5___224_>open 11 OLD SEQUENTIAL alignmentfile.ali rdpir___376W>not enough fields in the sequence line of the sequence entry:sequence:query:1::165 : : actual fields should be: 7 10 (Fields are separated by a colon. :) read_al_375E>unknown residue type,Position , Sequence: 1 1 recover_____E>ERROR_STATUS=>STOP_ON_ERROR 1 1
Yahoo! India Matrimony: Find your partner online.