Hi
After having built my models, i have decided to assess them using the ga341 score. the script i am using is:
# Example for: model.assess_ga341()
env = environ()
# Read a model previously generated by Modeller's automodel class mdl = model(env, file='.59.pdb')
# Set template-model sequence identity. (Not needed in this case, since # this is written by Modeller into the .pdb file.) mdl.seq_id = 30.174
score = mdl.assess_ga341()
the ouput of this script for two different models is:
model1 % sequence identity : 30.174000 Sequence length : 531 Compactness : 0.270804 Native energy (pair) : -225.273799 Native energy (surface) : -13.946407 Native energy (combined) : -6.357012 Z score (pair) : -9.813731 Z score (surface) : -7.147611 Z score (combined) : -11.464915 GA341 score : 1.000000
model2 % sequence identity : 30.174000 Sequence length : 531 Compactness : 0.256617 Native energy (pair) : -268.422282 Native energy (surface) : -16.727187 Native energy (combined) : -7.618686 Z score (pair) : -9.969647 Z score (surface) : -7.755271 Z score (combined) : -12.156111 GA341 score : 1.000000
how do i interpret these outputs? should both scores be 1?
Jo