Re: [modeller_usage] Error with the Mutate script

On 5/8/13 2:17 AM, Arjun Ray wrote: > I double checked and added again. Getting the same error.

As I said, Python is sensitive to indentation - and the indentation in your script is all over the place. Compare with the original script in the wiki at http://salilab.org/modeller/wiki/Mutate%20model

> #molecular dynamics > def refine(atmsel):

For example, both of these two lines should be left-aligned (no space at the start).

> md = molecular_dynamics(cap_atom_shift=0.39, md_time_step=4.0, > md_return='FINAL') > init_vel = True

Another example: "md =" and "init_vel =" should line up.

Ben Webb, Modeller Caretaker