8 May
2013
8 May
'13
8:11 a.m.
On 5/8/13 2:17 AM, Arjun Ray wrote: > I double checked and added again. Getting the same error.
As I said, Python is sensitive to indentation - and the indentation in your script is all over the place. Compare with the original script in the wiki at http://salilab.org/modeller/wiki/Mutate%20model
> #molecular dynamics > def refine(atmsel):
For example, both of these two lines should be left-aligned (no space at the start).
> md = molecular_dynamics(cap_atom_shift=0.39, md_time_step=4.0, > md_return='FINAL') > init_vel = True
Another example: "md =" and "init_vel =" should line up.
Ben Webb, Modeller Caretaker
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