Re: [modeller_usage] How to (partially) override model.patch_ss_templates() ?

On 11/26/18 2:22 PM, Luca Jovine wrote: > However I just tried what you suggested - shifting the > alignment so that one of the two Cys of a pair is no longer aligned > with the template -, but what happens is that the Cys pairs that I > specified as making an alternative disulfide using special_patches > are now not bonded

You will probably need to experiment a little bit with different alignments. You'll need to be careful not to change the alignment so much that it implies a structure that is inconsistent with the disulfides you want to impose.

Ben Webb, Modeller Caretaker