Re: [modeller_usage] Tweaking around with the same alignment

On 12/19/19 3:55 PM, Eugene Radchenko wrote: > Sometimes I want to play with different Modeller options and parameters > while working with the same alignment file. > However, to avoid overwriting the previous results, I actually have to > modify the alignment file and Modeller script anyway by changing the > target sequence name. > Am I doing something wrong and is there a better way?

Right, this is the normal way that automodel names its output files. But you can change this by subclassing and overriding the get_model_filename() method: https://salilab.org/modeller/9.23/manual/node75.html

Ben Webb, Modeller Caretaker