Ohhh okay thank you so much! I reinstalled OS but had to revert to a backup from April to do so (which is fine, I don't keep anything important offline), so now I have a clean slate to try installing Homebrew and Modeller again tomorrow, but I believe I already have Apple's Python? If so, is there a way to prevent the mismatch between the Homebrew Python and Apple's Python? Or a way to avoid the problem that caused the above errors? Because I only deleted the Python framework due to my attempts to troubleshoot the original problems. Thanks!
Best, Luna
On Thu, May 28, 2020 at 7:13 PM Modeller Caretaker < modeller-care@salilab.org> wrote:
> On 5/28/20 6:03 PM, Xiao Ran Luo via modeller_usage wrote: > > I just downloaded version 9.24 of Modeller onto by macOS version 10.14.1 > > using Homebrew, but when I try to run the first few lines of the basic > > tutorial, I get a lot of "command not found": > > > > Luos-Air:~ luoxiaoran$ >P1;TvLDH > > This is an alignment file. You're supposed to save this (using a text > editor) not "run" it at the terminal. I suggest you find and work > through a tutorial on using the terminal before you proceed. > > > Then when I try to do this (I am not sure what it is supposed to do, but > > have been guaranteed that it works) I get: > > > > Luos-Air:~ luoxiaoran$ cd /users/luoxiaoran/Documents/modAb101 > > This will change your current working directory. > > > Luos-Air:modAb101 luoxiaoran$ python3 modelAb101.py > > > > Traceback (most recent call last): > > > > File "modelAb101.py", line 2, in <module> > > > > from modeller import *# Load standard Modeller classes > > > > ModuleNotFoundError: No module named 'modeller' > > Either something is broken in your Homebrew installation, or you have a > mismatch between the Homebrew Python and Apple's Python. Reading the > rest of your email though, it sounds like you may have seriously damaged > your operating system (you should not be deleting the Python framework). > You should probably reinstall the OS before you proceed. > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org https://salilab.org/modeller/ > Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage >