[modeller_usage] Re: Loop Refining Multiple Model Failure Inquiry

On 9/28/22 4:55 AM, Joel Subach via modeller_usage wrote: > for the above topic I can not seem to generate more than 1-model, although > my script indicates 500 models.  I have tried using refine.very_fast and > refine.slow and moreover tried with different residue amounts for my > heptamer ranging from  84 residues (12/chain) up to 126 > residues (18/chain).  Maybe I can only encode up to > 12 residues in total per script?

There are no limits imposed by Modeller on the number of models you generate or the length of loops. It just runs in a simple for loop from LoopModel.loop.starting_model to LoopModel.loop.ending_model. If it's only building one model, you must have set one or both of these incorrectly.

Ben Webb, Modeller Caretaker