OK, will try - although, because the Cys pairs are very close, it is probably faster to just swap connectivity on the graphics and then relax the structure… Thanks, Luca
> On 28 Nov 2018, at 00:10, Modeller Caretaker modeller-care@salilab.org wrote: > > On 11/26/18 2:22 PM, Luca Jovine wrote: >> However I just tried what you suggested - shifting the >> alignment so that one of the two Cys of a pair is no longer aligned >> with the template -, but what happens is that the Cys pairs that I >> specified as making an alternative disulfide using special_patches >> are now not bonded > > You will probably need to experiment a little bit with different alignments. You'll need to be careful not to change the alignment so much that it implies a structure that is inconsistent with the disulfides you want to impose. > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org https://salilab.org/modeller/ > Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage
När du skickar e-post till Karolinska Institutet (KI) innebär detta att KI kommer att behandla dina personuppgifter. Här finns information om hur KI behandlar personuppgifterhttps://ki.se/medarbetare/integritetsskyddspolicy.
Sending email to Karolinska Institutet (KI) will result in KI processing your personal data. You can read more about KI’s processing of personal data herehttps://ki.se/en/staff/data-protection-policy.