On 11/16/16 3:07 PM, Fadhila Balqis N wrote: > I wanted to make a model of human flavin-containing monooxydase 3 (FMO3) > enzyme from the template FMO of /Saccharomyces pombe/. This enzyme has > FAD residue that is important to the project I'm working on. But of all > the model output, none came with this FAD residue. ... > The FAD residue was > not present and I ran out of ideas on how to make this work.
Without seeing what you tried already, I'm not sure how to advise you.
> read_pd_459W> Residue type FAD not recognized. 'automodel' model building > will treat this residue as a rigid body.
That's what I would expect to see if you used '.' in the alignment for that residue. Generally it's easiest to treat nonstandard residues as rigid bodies.
Ben Webb, Modeller Caretaker