Re: [modeller_usage] Missing Residues Modeling for an Oligomer Inquiry

On 8/27/22 12:03 PM, Joel Subach via modeller_usage wrote: > I am trying to model missing residues for a heptamer via the below > Modeller link, is Modeller able to model these 12-missing residues in > each of the seven exterior cytoplasmic loop-regions via a properly > formatted alignment.ali file or would modeling just the missing residues > for a single monomer work best for Modeller?

Modeller can remodel all chains simultaneously. It may be more efficient to remodel just the monomer though, particularly if you are working with a homoheptamer and the missing loops don't interact with each other.

Ben Webb, Modeller Caretaker