Re: [modeller_usage] can I add ambiguous restraints to modeller

On 3/11/21 11:32 AM, Li Xue wrote: > Does modeller accept ambiguous restraints? For example, I know there is > helix in a region but I am not sure where it starts.

Yes, if you can dream up a function of your coordinates, Modeller can restrain it. Built-in restraint forms can be seen at https://salilab.org/modeller/10.0/manual/node109.html or you can implement your own, as per https://salilab.org/modeller/10.0/manual/node480.html

That being said, we don't have an existing restraint that does exactly what you describe; you would have to add one.

Ben Webb, Modeller Caretaker