Hi All,
After sending e-mail yesterday, I received several e-mails and all told me I should see the .log file in the same directory. But I am sure there is no .log file in the directory. I am using MODELLER 6v2 for Windows and my operation system is Window 2000. I run "mod model-default" in windows command prompt "C:\mod6v2\examples\tutorial-model>". Following is the model-default.top file:
# Homology modelling by the MODELLER TOP routine 'model'.
INCLUDE # Include the predefined TOP routines
SET OUTPUT_CONTROL = 1 1 1 1 1 # uncomment to produce a large log file SET ALNFILE = 'alignment.ali' # alignment filename SET KNOWNS = '5fd1' # codes of the templates SET SEQUENCE = '1fdx' # code of the target SET ATOM_FILES_DIRECTORY = './:../atom_files' # directories for input atom files SET STARTING_MODEL= 1 # index of the first model SET ENDING_MODEL = 1 # index of the last model # (determines how many models to calculate)
CALL ROUTINE = 'model' # do homology modelling
After running "mod model-default", I only got six files: "1fdx.V99990001, 1fdx.D00000001, 1fdx.B99990001, 1fdx.sch, 1fdx.rsr and 1fdx.ini. I can open the 1fdx.B99990001 by a viewer.
Thanks for all your help,
Dong