Thank you very much for your reply. Yes, I am trying to determine which of the 4 sequences is the best. I will make a model for each of the 4 templates then.
Thank you.
Best wishes, Susana
On Wed, Feb 29, 2012 at 6:31 PM, Modeller Caretaker < modeller-care@salilab.org> wrote:
> On 2/29/12 10:01 AM, Susana Tomasio wrote: > >> I am trying to search for the best template for my target molecule, >> and therefore I created a file in PIR format with my sequences and then >> I ran build_profile.py. I got the following error in my log file: >> > > build_profile is designed to search through a sequence database (e.g. all > sequences from PDB or UniProt) to find matches for a single query sequence. > You've built a database of only 4 sequences. This is not nearly large > enough for build_profile to be able to determine accurate statistics. What > are you trying to do? If you want to determine which of the 4 sequences is > the best template, one possible solution is simply to build models for each > of the 4 templates and then assess them. > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org http://www.salilab.org/**modeller/http://www.salilab.org/modeller/ > Modeller mail list: http://salilab.org/mailman/**listinfo/modeller_usagehttp://salilab.org/mailman/listinfo/modeller_usage >