Re: [modeller_usage] Denovo loop remodeling

Is there any rmsd-energy.py script in modeller to calculate the RMSD and energy of all generatedpdb files with template. Data Plot: Energy vs Rmsd?

Thanks Cheers,

________________________________ From: Modeller Caretaker modeller-care@salilab.org To: Ramin Ekhteiari ramin_ekh@yahoo.com Cc: "modeller_usage@salilab.org" modeller_usage@salilab.org Sent: Friday, June 28, 2013 6:15 PM Subject: Re: [modeller_usage] Denovo loop remodeling

On 6/28/13 7:56 AM, Ramin Ekhteiari wrote: > Is there any Denovo loop remodeling on the base of the fragment data > base in MODELLER?

Modeller uses a statistical potential for denovo loop modeling, not a fragment database.

Ben Webb, Modeller Caretaker