Re: [modeller_usage] ModellerError: read_te_290E> Number of residues in the alignment and pdb files are different

On 8/7/18 12:29 PM, Ahmad Khalifa wrote: > I'm getting this error "ModellerError: read_te_290E> Number of residues > in the alignment and  pdb files are different:      864      861 For > alignment entry:        1  3jar_template".

Your alignment file tells Modeller to read 861 residues from the PDB file, so that's what it did:

> >P1;3jar_template > structureX:3jar_template.pdb: 1 :B:+861 :K:::-1.00:-1.00

First thing I would try is to change that +861 to +864.

Ben Webb, Modeller Caretaker