On 7/23/24 8:25 AM, Junyi.FENG--- via modeller_usage wrote: > While I was running the second script which is called compare.py and is the > following: ... > _modeller.ModellerError: fit2xyz_296E> Number of equivalent positions < 3: 0
It sounds like you are doing something similar to the basic tutorial at https://salilab.org/modeller/tutorial/basic.html and are trying to compare your identified templates. But your templates are too different to be compared this way (for example, one template covers only the C-terminal region of your target, and another template covers the N-terminal region, so there is no structural overlap between them). In this case, you can just skip this step and use another method to select your templates.
Ben Webb, Modeller Caretaker