Possibly so.
Andrej
-- Andrej Sali, Professor Departments of Biopharmaceutical Sciences and Pharmaceutical Chemistry, and California Institute for Quantitative Biomedical Research Mission Bay Genentech Hall 600 16th Street, Suite N472D University of California, San Francisco San Francisco, CA 94143-2240 (CA 94107 for direct delivery by courier) Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Tel Assistant +1 (415)514-4228; Lab +1 (415) 514-4232, 4233, 4239 Email sali@salilab.org; Web http://salilab.org
> -----Original Message----- > From: owner-modeller_usage@salilab.org > [mailto:owner-modeller_usage@salilab.org] On Behalf Of quentin kaas > Sent: Tuesday, March 18, 2003 7:00 AM > To: modeller_usage@salilab.org > Subject: Re: Array too small. Increase MPAIRS > > > I resolved my MPAIRS problem in using the top_heav.lib > topology library > instead of the top_allh.lib. As my model is quite big, the > hydrogens may be > too numerous to be handled by Modeller. > Thank you for your help. > > Quentin Kaas > > Le Lundi 17 Mars 2003 16:08, Andrej Sali a écrit : > > Without seeing the input/output files, it probably indicates a > > difficult optimization problem that runs into many overlapping atom > > pairs. Can you improve the alignment? > > > > Andrej > >