------ Forwarded Message From: quentin kaas kaas@ligm.igh.cnrs.fr Organization: CNRS - IGH Date: Fri, 14 Mar 2003 15:19:15 +0100 To: modeller-care@salilab.org Subject: Array too small. Increase MPAIRS

I get a problem when I used Modeller when I do simple optimizations : "Array too small. Increase MPAIRS" I have seen in the archives that it was a problem with older version and I get and install the last version but it still give the same answer... Am I doing something wrong or is it a source code problem ?

My top file is :

SET OUTPUT_CONTROL = 1 1 1 1 1

READ_TOPOLOGY FILE = '$(LIB)/top_allh.lib' READ_PARAMETERS FILE = '$(LIB)/par.lib' READ_MODEL FILE = '../../1hsa' READ_ALIGNMENT FILE = 'model_MHCp.ali', ALIGN_CODES = '1hsa' 'MHCp' GENERATE_TOPOLOGY SEQUENCE = 'MHCp' TRANSFER_XYZ BUILD_MODEL INITIALIZE_XYZ = off WRITE_MODEL FILE = 'MHCp.ini'

MAKE_RESTRAINTS RESTRAINT_TYPE = 'stereo' WRITE_RESTRAINTS FILE = 'MHCp.rsr' SWITCH_TRACE TRACE_OUTPUT = 1, FILE = 'MHCp.trc' OPTIMIZE OPTIMIZATION_METHOD = 1, MAX_ITERATIONS = 20

WRITE_MODEL FILE = 'MHCp.B'

Thanks in advance

Quentin Kaas, IMGT

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