Dear Sir I am trying to build a model with GTP can you pls tell were can I find parameters for GTP or you have it somewhere yoram
On Wed, Dec 03, 2003 at 10:25:58AM +0200, devary@jct.ac.il wrote: > Dear Sir I am trying to build a model with GTP can you pls > tell were can I find parameters for GTP or you have it somewhere
Modeller has GTP parameters (see for example, modlib/top_heav.lib and search for GTP). To include GTP in an alignment, use the 'y' character (see modlib/restyp.lib).
See also http://salilab.org/modeller/FAQ.html#17 for full details on how Modeller parameters are used.
Ben Webb, Modeller Caretaker
Please check $MODINSTALLXvX/modlib/top_heav.lib.
Best Eswar.
--- Eswar Narayanan, Ph.D Mission Bay Genentech Hall 600 16th Street, Suite N474Q University of California, San Francisco San Francisco, CA 94143-2240 (CA 94158 for courier) Tel +1 (415) 514-4233; Fax +1 (415) 514-4231 http://www.salilab.org/~eashwar
> -----Original Message----- > From: modeller_usage-bounces@salilab.org [mailto:modeller_usage- > bounces@salilab.org] On Behalf Of devary@jct.ac.il > Sent: Wednesday, December 03, 2003 12:26 AM > To: modeller_usage@salilab.org > Subject: [modeller_usage] GTP RTF > > Dear Sir I am trying to build a model with GTP can you pls > tell were can I find parameters for GTP or you have it somewhere > yoram > > _______________________________________________ > modeller_usage mailing list > modeller_usage@salilab.org > http://salilab.org/mailman/listinfo/modeller_usage
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devary＠jct.ac.il -
Eswar Narayanan -
Modeller Caretaker