On Wed, Dec 03, 2003 at 10:25:58AM +0200, email@example.com wrote: > Dear Sir I am trying to build a model with GTP can you pls > tell were can I find parameters for GTP or you have it somewhere
Modeller has GTP parameters (see for example, modlib/top_heav.lib and search for GTP). To include GTP in an alignment, use the 'y' character (see modlib/restyp.lib).
See also http://salilab.org/modeller/FAQ.html#17 for full details on how Modeller parameters are used.
Ben Webb, Modeller Caretaker