Hi all

I'm new to this area. Just installed modeller in the windows XP and run the test model.

Now i have to model a protein with 500 amino acid residues, for which there are no pdb matches in the pdb database. So i have gone for pfam domain search. I found that a domain with 500 residues and from 30-494 is aligning with my sequence with a e value of 3e-11. Can i take this portion as a template for modelling? and what should i do for the remaining amino acids (1.e) 1-29 and 494-500.? should i follow the steps involved in advance modelling?

please do explain me the steps involved

with regards

sankari

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