Hello,
I want to use this script (*https://salilab.org/modeller/wiki/Mutate%20model https://salilab.org/modeller/wiki/Mutate%20model*) for mutating a single amino acid residue from aspartic acid to tyrosine. How and where do I need to modify the script?
Thank you in advance.
Sincerely, Dr. Swapnil.
On 12/6/21 1:03 AM, Swapnil Bhujbal wrote: > I want to use this script > (*https://salilab.org/modeller/wiki/Mutate%20model > https://salilab.org/modeller/wiki/Mutate%20model*) for mutating a > single amino acid residue from aspartic acid to tyrosine. > How and where do I need to modify the script?
If that's all you want to do, no modification of the script is required. Just specify the residue number/chain ID and the new residue name (TYR) as arguments when you run the script. See the script itself for usage info.
Ben Webb, Modeller Caretaker
Thank you Ben Webb for your answer.
I have modified it according to my requirements and generated the model successfully.
But I have a question regarding *rand_seed* value. It is mentioned that,
*"Set a different value for rand_seed to get a different final modelenv = Environ(rand_seed=-49837)"*.
So if I wish to generate multiple models, then which value (exact number) should I use?
Thanks in advance.
On Tue, Dec 7, 2021 at 2:09 AM Modeller Caretaker modeller-care@salilab.org wrote:
> On 12/6/21 1:03 AM, Swapnil Bhujbal wrote: > > I want to use this script > > (*https://salilab.org/modeller/wiki/Mutate%20model > > https://salilab.org/modeller/wiki/Mutate%20model*) for mutating a > > single amino acid residue from aspartic acid to tyrosine. > > How and where do I need to modify the script? > > If that's all you want to do, no modification of the script is required. > Just specify the residue number/chain ID and the new residue name (TYR) > as arguments when you run the script. See the script itself for usage info. > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org https://salilab.org/modeller/ > Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage >
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Modeller Caretaker
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Swapnil Bhujbal