Dear All,

With MODELLER, I wonder if it is possible to use different template(s) for different region of one target protein. For example, One protein has domain 1, 2 and 3. I would like to construct a complete model of this protein, with templates A and B for domain 1, templates C,D,and E for domain 3, and domain 2 already has coordinates/structure, which need to be preserved in the complete model.

Is there any way to do the above? If so, how? I tried to use the "inifile" feature and use the existing coordinate file of domain 2 as "inifile". while I got error message of " Atom index is out of range (iatm,natm)".

Any help/information will be very much appreciated.

Shirley

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